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Table 3 Putative codons in Pi04314 sequences detected under purify selection using the PAML package and two approaches implemented in the hyphy software

From: Mutations in the signal peptide of effector gene Pi04314 contribute to the adaptive evolution of the Phytophthora infestans

Codon

PAML

 

HyPhy

 

Model M8

 

SLAC

 

REL

 

dN-dS

PPb

 

dN-dS

PPb

 

dN-dS

PPb

3

-20.75

0.959*

 

-31.8

0.95**

 

-21.967

0.999**