Table 1 Summary of Spirostomum species and transcriptomes included in the present work
MAC pattern | Species | Population ID | sc RNA-seq protocol | Raw reads (M) | Eukaryotic Contigs* | BUSCO Analysis (%) | GenBank accession # | Country | Habitat | Reference |
|---|---|---|---|---|---|---|---|---|---|---|
Moniliform | S. ambiguum | Sa_C1 | Total RNA extraction | 61 | 16,523 | 87.7 | SRR12125180 | China | Fresh water | Mukhtar et al., [19] |
Moniliform | S. ambiguum | Sa_U1 | SMART-Seq v4 | 48 | 9,567 | 90.7 | SRR10512970 | USA | Fresh water | Yan et al., [36] |
Moniliform | S. ambiguum | Sa_K1 | SMART-Seq v4 | 48 | 7,421 | 80.1 | SRR29149931 | South Korea | Fresh water | This study |
Moniliform | S. ambiguum | Sa_K2 | SMART-Seq v4 | 53 | 8,531 | 86.5 | SRR29149930 | South Korea | Fresh water | This study |
Moniliform | S. ambiguum | Sa_K3 | SMART-Seq v4 | 106 | 8,510 | 88.9 | SRR29149919 | South Korea | Fresh water | This study |
Moniliform | S. ambiguum | Sa_K4 | Smart-seq2 | 128 | 9,515 | 88.3 | SRR29149913 | South Korea | Fresh water | This study |
Moniliform | S. ambiguum | Sa_K5 | Smart-seq2 | 124 | 7,070 | 81.3 | SRR29149912 | South Korea | Fresh water | This study |
Moniliform | S. ambiguum | Sa_K6 | Smart-seq2 | 114 | 8,140 | 87.2 | SRR29149911 | South Korea | Fresh water | This study |
Moniliform | S. ambiguum | Sa_K7 | Smart-seq2 | 48 | 8,580 | 84.1 | SRR29149910 | South Korea | Fresh water | This study |
Ellipsoid | S. caudatum | Sc_K1 | Smart-seq2 | 70 | 2,078 | 29.3 | SRR29149909 | South Korea | Brackish water | This study |
Moniliform | S. minus | Sm_U1 | SMART-Seq v4 | 59 | 3,789 | 63.7 | SRR10513010 | USA | Fresh water | Yan et al., [36] |
Moniliform | S. minus | Sm_U6 | SMART-Seq v4 | 13 | 7,085 | 82.5 | SRR29149908 | USA | Fresh water | This study |
Moniliform | S. minus | Sm_U25 | SMART-Seq v4 | 36 | 2,091 | 45.1 | SRR29149926 | USA | Fresh water | This study |
Moniliform | S. minus | Sm_K1 | Smart-seq2 | 54 | 4,969 | 72.6 | SRR29149907 | South Korea | Fresh water | This study |
Moniliform | S. aff. minus | Sm_K2 | Smart-seq2 | 73 | 11,040 | 93 | SRR29149929 | South Korea | Fresh water | This study |
Moniliform | S. minus | Sm_K3 | Smart-seq2 | 71 | 8,456 | 83 | SRR29149928 | South Korea | Fresh water | This study |
Moniliform | S. minus | Sm_K4 | Smart-seq2 | 85 | 10,188 | 88.3 | SRR29149927 | South Korea | Fresh water | This study |
Moniliform | S. sp. | Ss_E1 | Smart-seq2 | 12 | 7,799 | 85.5 | SRR7141210 | Sweden | Fresh water | Hines et al., [18] |
Moniliform | S. semivirescens | Sv_E1 | Smart-seq2 | 2 | 2,743 | 55.6 | SRR7141204 | England | Fresh water | Hines et al., [18] |
Moniliform | S. semivirescens | Sv_E2 | Smart-seq2 | 4 | 6,454 | 77.8 | SRR7141205 | England | Fresh water | Hines et al., [18] |
Moniliform | S. semivirescens | Sv_E3 | Smart-seq2 | 4 | 5,473 | 74.9 | SRR7141206 | Sweden | Fresh water | Hines et al., [18] |
Moniliform | S. semivirescens | Sv_E4 | Smart-seq2 | 3 | 5,102 | 76 | SRR7141207 | Sweden | Fresh water | Hines et al., [18] |
Moniliform | S. semivirescens | Sv_E5 | Smart-seq2 | 1 | 3,052 | 62 | SRR7141208 | Sweden | Fresh water | Hines et al., [18] |
Moniliform | S. semivirescens | Sv_E6 | Smart-seq2 | 3 | 7,285 | 84.7 | SRR7141209 | Sweden | Fresh water | Hines et al., [18] |
Moniliform | S. subtilis | Su_U10 | SMART-Seq v4 | 12 | 9,684 | 91.8 | SRR29149925 | USA | Fresh water | This study |
Moniliform | S. subtilis | Su_C1 | Total RNA extraction | 51 | 17,617 | 91.2 | SRR12125179 | China | Fresh water | Mukhtar et al., [19] |
Moniliform | S. subtilis | Su_K1 | Smart-seq2 | 56 | 9,110 | 86 | SRR29149924 | South Korea | Fresh water | This study |
Moniliform | S. subtilis | Su_K2 | Smart-seq2 | 80 | 8,591 | 85.4 | SRR29149923 | South Korea | Fresh water | This study |
Moniliform | S. subtilis | Su_K3 | Smart-seq2 | 51 | 10,216 | 93 | SRR29149922 | South Korea | Fresh water | This study |
Ellipsoid | S. teres | St_C1 | Total RNA extraction | 53 | 14,595 | 94.2 | SRR12125178 | China | Fresh water | Mukhtar et al., [19] |
Ellipsoid | S. teres | St_K1 | Smart-seq2 | 54 | 5,336 | 72.5 | SRR29149921 | South Korea | Fresh water | This study |
Ellipsoid | S. teres | St_K3 | SMART-Seq v4 | 53 | 7,929 | 84.9 | SRR29149920 | South Korea | Fresh water | This study |
Elongated | S. yagiui | Sy_K1 | Smart-seq2 | 54 | 6,037 | 78.4 | SRR29149918 | South Korea | Fresh water | This study |
Elongated | S. yagiui | Sy_K2 | SMART-Seq v4 | 58 | 6,396 | 80.7 | SRR29149917 | South Korea | Fresh water | This study |
Elongated | S. yagiui | Sy_K3 | Smart-seq2 | 165 | 7,594 | 84.8 | SRR29149916 | South Korea | Fresh water | This study |
Elongated | S. yagiui | Sy_K4 | Smart-seq2 | 109 | 7,558 | 81.3 | SRR29149915 | South Korea | Fresh water | This study |
Elongated | S. yagiui | Sy_K5 | Smart-seq2 | 113 | 7,118 | 87.8 | SRR29149914 | South Korea | Fresh water | This study |
Moniliform | Anigsteinia sp. | As_U1 | SMART-Seq v4 | 183 | 2,877 | 33.9 | SRR10512978 | USA | Marine water | Yan et al., [36] |