Next-generation phylogeography reveals unanticipated population history and climate and human impacts on the endangered floodplain bitterling (Acheilognathus longipinnis)

Onuki, Keisuke; Ito, Ryosuke K.; Mishina, Tappei; Hashiguchi, Yasuyuki; Ikeya, Koki; Uehara, Kazuhiko; Nishio, Masaki; Tabata, Ryoichi; Mori, Seiichi; Watanabe, Katsutoshi

doi:10.1186/s12862-024-02326-y

Table 1 Sample information of Acheilognathus longipinnis and Acheilognathus typus (outgroup) used in the study

From: Next-generation phylogeography reveals unanticipated population history and climate and human impacts on the endangered floodplain bitterling (Acheilognathus longipinnis)

Sample ID	Species	Population	Type	Locality	Collecting Date
T-01	Acheilognathus longipinnis	Toyama	wild	Busshouji River, Himi, Toyama, Japan	8/23/2020
T-02	Acheilognathus longipinnis	Toyama	wild	Busshouji River, Himi, Toyama, Japan	8/23/2020
T-03 ‡	Acheilognathus longipinnis	Toyama	wild	Busshouji River, Himi, Toyama, Japan	8/23/2020
T-04	Acheilognathus longipinnis	Toyama	wild	Busshouji River, Himi, Toyama, Japan	8/23/2020
T-05 ‡	Acheilognathus longipinnis	Toyama	wild	Busshouji River, Himi, Toyama, Japan	8/23/2020
T-06 ‡	Acheilognathus longipinnis	Toyama	wild	Busshouji River, Himi, Toyama, Japan	8/23/2020
T-07 ‡	Acheilognathus longipinnis	Toyama	wild	Busshouji River, Himi, Toyama, Japan	8/23/2020
T-08	Acheilognathus longipinnis	Toyama	wild	Busshouji River, Himi, Toyama, Japan	8/23/2020
N-01	Acheilognathus longipinnis	Nobi	wild	Kiso River, Inazawa, Aichi, Japan	6/14/2018
N-02	Acheilognathus longipinnis	Nobi	wild	Kiso River, Inazawa, Aichi, Japan	6/14/2018
N-03 ‡	Acheilognathus longipinnis	Nobi	wild	Kiso River, Inazawa, Aichi, Japan	6/14/2018
N-04	Acheilognathus longipinnis	Nobi	wild	Kiso River, Inazawa, Aichi, Japan	6/14/2018
N-05 ‡	Acheilognathus longipinnis	Nobi	wild	Kiso River, Inazawa, Aichi, Japan	6/14/2018
N-06 † ‡	Acheilognathus longipinnis	Nobi	captive	Gifu World Fresh Water Aquarium, Kakamigahara, Gifu, Japan	11/3/2017
N-07	Acheilognathus longipinnis	Nobi	captive	Gifu World Fresh Water Aquarium, Kakamigahara, Gifu, Japan	11/3/2017
N-08 ‡	Acheilognathus longipinnis	Nobi	captive	Gifu World Fresh Water Aquarium, Kakamigahara, Gifu, Japan	11/3/2017
O-01	Acheilognathus longipinnis	Osaka	wild	RIEAFO Biodiversity Center, Neyagawa, Osaka, Japan	11/29/2018
O-02	Acheilognathus longipinnis	Osaka	wild	RIEAFO Biodiversity Center, Neyagawa, Osaka, Japan	11/29/2018
O-03	Acheilognathus longipinnis	Osaka	wild	RIEAFO Biodiversity Center, Neyagawa, Osaka, Japan	11/29/2018
O-04	Acheilognathus longipinnis	Osaka	wild	RIEAFO Biodiversity Center, Neyagawa, Osaka, Japan	11/29/2018
O-05 ‡	Acheilognathus longipinnis	Osaka	wild	RIEAFO Biodiversity Center, Neyagawa, Osaka, Japan	11/29/2018
O-06 ‡	Acheilognathus longipinnis	Osaka	wild	RIEAFO Biodiversity Center, Neyagawa, Osaka, Japan	11/29/2018
O-07 ‡	Acheilognathus longipinnis	Osaka	captive	Lake Biwa Museum, Kusatsu, Shiga, Japan	12/3/2019
O-08 ‡	Acheilognathus longipinnis	Osaka	captive	Lake Biwa Museum, Kusatsu, Shiga, Japan	10/21/2020
-	Acheilognathus typus	-	-	Izunuma Lake, Tome, Miyagi, Japan	2/25/2019

Note † Used for de novo whole genome sequencing; ‡ Used for MSMC analysis; RIEAFO: Research Institute of Environment, Agriculture and Fisheries, Osaka Prefecture

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ISSN: 2730-7182

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Table 1 Sample information of Acheilognathus longipinnis and Acheilognathus typus (outgroup) used in the study

BMC Ecology and Evolution

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