From: mtDNA “nomenclutter” and its consequences on the interpretation of genetic data
Richards et al., 1998 outlined several principles for a cladistic notation for mitochondrial clusters: |
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1) Single capital letters denote principal clusters E.g., A, B, C, D… |
2) Nesting of clusters is permitted E.g., C belongs to M, and M belongs to L3 |
3) Subclusters of single-capital-letter-coded clusters can have non-negative integer suffixes that follow hierarchical notation with alternating small letters and numbers E.g., C1d1 is a subcluster of C1d which is a subcluster of C1 which belongs to C |
4) Clade can be referred to using the names of its prominent subclades E.g., CZ refers to the smallest monophyletic clade containing C and Z |
5) Paraphyletic clusters can be temporarily labeled using the asterisk "*" as exponent suffix E.g., If U6b1, U6b2, and U6b3 are known then U6b* includes all U6b sequences not in already mentioned subclusters |