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Table 2 Avian virus polymerase sequencesa described in this study

From: From islands to infectomes: host-specific viral diversity among birds across remote islands

Virus taxonomy

Host

Library

GenBank accession

Blastx top hit

Percentage identity (%)

Length (nt)

Novel?

Astroviridae; Pachyptila astrovirus

Pachyptila vittata

OM8

OR645486

AXF38643.1 Avastrovirus 2

56

608

Yes

Reoviridae; Pachyptila rotavirus D

Pachyptila turtur

OM1

OR645487

APR73519.1 Rotavirus D

79.7

240

Yesa

Reoviridae; Sturnus rotavirus A

Sturnus vulgaris

OM4

OR645488

UNY48222.1 Rotavirus sp.

80.7

1887

Yesa

Reoviridae; Pachyptila rotavirus D

Pachyptila vittata

OM7

OR645489

AXF38701.1 Rotavirus D

67.1

2089

Yesa

Caliciviridae; Broad-billed prion calicivirus

Pachyptila vittata

OM8

OR645492

QUS52514.1 Goose calicivirus

53.6

303

Yes

Herpesviridae; Petroica herpesvirus

Petroica traversi

BR4

OR645493

AVQ93817.1 Human betaherpesvirus 6

41.3

272

Yes

Herpesviridae; Ardenna herpesvirus

Ardenna grisea

OM6

OR645494

NP_944402.1 Psittacid alphaherpesvirus 1

89.9

3252

Yesa

Papillomaviridae; Garrodia papillomavirus

Garrodia nereis

OM9

OR645495

NP_647590.1 Psittacus erithacus papillomavirus 1

60.7

873

Yes

Papillomaviridae; Sturnus papillomavirus

Sturnus vulgaris

OM3

OR900097

AYN76738.1 Etapapillomavirus 1

74.0

301

Yes

Flaviviridae; Petroica flavivirus 1

Petroica traversi

BR1

OR645496

QUE43478.1 Goose pegivirus

82.9

226

Yes

Flaviviridae; Petroica flavivirus 2

Petroica traversi

BM2

OR645498

UCJ00138.1 Pin virus

90

214

Noa

Flaviviridae; Garrodia flavivirus

Garrodia nereis

OM9

OR645499

UCJ00138.1 Pin virus

52.4

920

Yes

Picornaviridae; Passerivirus GPS

Sturnus vulgaris

OM4

OR645505

YP_003853285.1 Passerivirus A1

80.7

7494

Yes

Picornaviridae; Petroica picornavirus 1

Petroica traversi

BR1

OR645502

UCJ00139.1 Myna hepatovirus

34.5

711

Yes

Picornaviridae; Petroica picornavirus 2

Petroica traversi

BR3

OR645503

UCJ00139.1 Myna hepatovirus

33.7

933

Yes

Picornaviridae; Sturnus picornavirus

Sturnus vulgaris

OM4

OR645506

QNQ73364.1 Soft-shelled turtle systemic septicemia spherical virus

49.4

286

Yes

Picornaviridae; Pachyptila picornavirus

Pachyptila vittata

OM7

OR645507

CBY02484.1 Pigeon picornavirus A

61.3

356

Yes

Picornaviridae; Pachyptila hepato-like virus 1

Pachyptila vittata

OM8

OR645508

ART66868.1 Hepatovirus A

44.8

846

Yes

Picornaviridae; Pachyptila hepato-like virus 2

Pachyptila vittata

OM8

OR645509

YP_009164030.1 Phopivirus

48

643

Yes

Picornaviridae; Pachyptila megrivirus

Pachyptila vittata

OM8

OR645510

QDY92330.1 Red-capped plover megrivirus

64.1

577

Yes

Picornaviridae; Thinornis picornavirus

Thinornis novaeseelandiae

SP1

OR900098

YP_164335.1 anativirus A1

38.6

795

 

Hepadnaviridae; Garrodia hepatitis B-like virus

Garrodia nereis

OM9

OR645514

AJE59611.1 Duck hepatitis B virus

85.4

537

Yes

  1. aIf the virus was found in multiple libraries or species, the library with the longest sequence is detailed here. For a full breakdown of identified viruses see Additional file 6