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Fig. 3 | BMC Ecology and Evolution

Fig. 3

From: Base-substitution mutation rate across the nuclear genome of Alpheus snapping shrimp and the timing of isolation by the Isthmus of Panama

Fig. 3

A Proportion of loci shared among individuals in the Am4s2 dataset. Loci shared between individuals (black circles) or successfully amplified within an individual (red circles) expressed as the proportion from 0 to 1 of all 48,062 loci scored in the Am4s2 dataset. Plotted with the phylogenetic tree based on maximum likelihood inference, with branch lengths scaled in substitutions per nucleotide. B Ordination of Alpheus samples based on nonmetric multidimensional scaling of the locus presence-absence matrix, K = 3, colored by species

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BMC Ecology and Evolution

ISSN: 2730-7182

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