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Table 3 SULT1A4 and SULT1A3 Genomic Region Differences

From: Phylogenomic approaches to common problems encountered in the analysis of low copy repeats: The sulfotransferase 1A gene family example

Location*

Nucleotide

SULT1A4 Region

SULT1A3 Region

5' UTR

-6,246

G

C

5' UTR

-6,118

C

T

5' UTR

-6,007

G

C

5' UTR

-5,246

-

T

5' UTR

-4,433

-

T

Intron 1B

-2,775

C

T

Intron 1B

-2,671

-

T

Intron 1B

-2,670

-

T

Intron 1B

-2,594

T

G

Intron 1A

-91

-

A

Exon 2

+105

A

G

Intron 4

+853

-

A

Intron 4

+1,487

A

G

Exon 8

+3,569

-

A

Exon 8

+3,570

-

A

Exon 8

+3,571

-

T

Exon 8

+3,572

-

T

3' UTR

+5,379

G

C

3' UTR

+6,438

C

-

3' UTR

+6,335

C

-

3' UTR

+6,210

C

-

  1. * 21 alignment positions are shown where the nucleotide/gapping (-) of the SULT1A4 region differed from that of the SULT1A3 region. Exon and intron names of the SULT1A3 gene are according to [33]. All nucleotides are numbered relative to the first nucleotide of the start codon, which has a value of +1. There was no position 'zero'. The last nucleotide of the coding sequence occurs at position +3,188. Approximately 3 kb of upstream (5' UTR) and downstream (3' UTR) nucleotides were included in the comparison.
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BMC Ecology and Evolution

ISSN: 2730-7182

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