| Â |
N
|
P
(d)
(1,N) *10
2
|
e
(d)
N
|
E
(d)
N
|
f
(d)
N
|
M
(d)
N
|
M
(d)
N
/E
(d)
N
|
c
(d)
du
|
T
(d)
N
|
|---|
Sce | 130 | 0.284 | 295267 | 47.46 | 260080 | 20381.6 | 429.5 | 1.903 | 1939.3 |
Dme | 335 | 0.227 | 778830 | 153.74 | 734725 | 37409.9 | 243.3 | 1.784 | 3337.0 |
Cel | 662 | 0.160 | 1.866*106
| 347.76 | 1.803*106
| 68709.6 | 197.6 | 1.523 | 5232.2 |
Ath | 1535 | 0.016 | 2.150*107
| 702.65 | 2.087*107
| 529639. | 753.8 | 2.382 | 63080.0 |
Hsa | 1151 | 0.026 | 1.329*107
| 505.26 | 1.29*107
| 300665. | 595.1 | 2.721 | 40905.5 |
Tma | 97 | 0.060 | 681356 | 31.47 | 513450 | 80677.3 | 2563.6 | 1.109 | 4473.6 |
Mth | 43 | 1.125 | 37131.5 | 14.91 | 28570 | 4707.04 | 315.9 | 1.091 | 256.8 |
Sso | 81 | 0.461 | 129115 | 30.14 | 98440 | 12853.5 | 426.5 | 1.253 | 805.3 |
Bsu | 124 | 0.284 | 237343 | 48.89 | 202150 | 22921.0 | 468.8 | 1.320 | 1512.8 |
Eco | 140 | 0.155 | 440665 | 51.67 | 375943 | 37959.8 | 734.7 | 1.544 | 2930.5 |
- For the linear BDIM (d = 1) and for the largest family of size N in each genome, the table shows the probability of formation P
(d)(1,N), mean number of events before extinction of the largest family e
(d)
N
; mean number of events before formation of the largest family from a singleton, f
(d)
N
; mean times of formation M
(d)
N
and extinction E
(d)
N
(in 1/λ units); the value of coefficient c
(d)
du
= r
du
/λ; mean times of formation T
(d)
N
in Ga (109 yrs) under r
du
= 2 × 10-8. The model parameters were genome-specific as determined previously [12]. and were the same for all model degrees according to (2.4). Species abbreviations: Sce, Saccharomyces cerevisiae, Dme, Drosophila melanogaster, Cel, Caenorhabditis elegans, Ath, Arabidopsis thaliana, Hsa, Homo sapiens, Tma, Thermotoga maritima, Mth, Methanothermobacter thermoautotrophicum, Sso, Sulfolobus solfataricus, Bsu, Bacillus subtilis, Eco, Escherichia coli.
